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Ellenberger and co-personnel (eight) experienced intuited exactly this type of motion with the OB area every time they solved the crystal composition of your much larger human DNA ligase I (HuLig1; 919 amino acids) bound to an adenylylated nick. Their landmark structure was the primary to document the circumferential envelopment with the DNA duplex by a ligase clamp and the ensuing bending and distortion with the duplex that power the base pairs about the 3′-OH aspect of your nick into an RNA-like A helical conformation (8). Comparable distortions have been observed while in the ChVLig·DNA elaborate (7).
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DNA binding involves a nearly one hundred eighty° rotation of the OB domain around a swivel (denoted because of the black arrow
). During the cost-free ChVLig-AMP, the OB area is mirrored from the NTase area to totally expose the DNA-binding surface over the AMP-binding pocket. The peptide segment that is certainly destined to become the latch is disordered while in the totally free ligase and sensitive to proteolysis, but this phase is protected from proteolysis when ChVLig binds to nicked DNA.
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